python-espressomd-espresso-fix-comment-typo

Before

module

comment "#"

comment "# This file is part of ESPResSo."

comment "#"

comment "# ESPResSo is free software: you can redistribute it and/or "...

comment "# it under the terms of the GNU General Public License as pu"...

comment "# the Free Software Foundation, either version 3 of the Lice"...

comment "# (at your option) any later version."

comment "#"

comment "# ESPResSo is distributed in the hope that it will be useful"...

comment "# but WITHOUT ANY WARRANTY; without even the implied warrant"...

comment "# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See "...

comment "# GNU General Public License for more details."

comment "#"

comment "# You should have received a copy of the GNU General Public "...

comment "# along with this program. If not, see <http://www.gnu.org/"...

comment "#"

import_statement

import "import"

aliased_import

dotted_name

identifier "unittest"

as "as"

identifier "ut"

import_statement

import "import"

aliased_import

dotted_name

identifier "espressomd"

. "."

identifier "lees_edwards"

as "as"

identifier "lees_edwards"

import_statement

import "import"

dotted_name

identifier "espressomd"

import_statement

import "import"

dotted_name

identifier "espressomd"

. "."

identifier "lb"

import_statement

import "import"

aliased_import

dotted_name

identifier "numpy"

as "as"

identifier "np"

import_statement

import "import"

dotted_name

identifier "itertools"

import_statement

import "import"

dotted_name

identifier "copy"

import_statement

import "import"

aliased_import

dotted_name

identifier "unittest_decorators"

as "as"

identifier "utx"

import_from_statement

from "from"

dotted_name

identifier "tests_common"

import "import"

dotted_name

identifier "fold_index"

expression_statement (+23 nodes collapsed)

function_definition (+34 nodes collapsed)

function_definition (+39 nodes collapsed)

function_definition (+94 nodes collapsed)

function_definition (+78 nodes collapsed)

function_definition

def "def"

identifier "le_aware_lb_nodes_around_pos"

parameters

( "("

identifier "folded_pos"

, ","

identifier "lbf"

, ","

identifier "le_pos_offset"

, ","

identifier "shear_direction"

, ","

identifier "shear_plane_normal"

) ")"

: ":"

block

expression_statement

string

string_start "\"\"\""

string_content "Returns LB node(s) relevant for interpolation around the giv"...

string_end "\"\"\""

comment "# helper to get lb node from index with folding"

function_definition (+26 nodes collapsed)

comment "# center of first lb lattice point is at 0.5 in each Cartesi"...

comment "# determine position in lb units for 3 cases;"

comment "# unshifted, lees-edwards shifted to the left and to the rig"...

expression_statement

assignment

identifier "pos_unshifted_lb_units"

= "="

binary_operator

identifier "folded_pos"

/ "/"

attribute

identifier "lbf"

. "."

identifier "agrid"

- "-"

float "0.5"

comment "# relative to node centers"

expression_statement

assignment

identifier "shear_vec"

= "="

call

identifier "unit_vec"

argument_list

( "("

identifier "shear_direction"

) ")"

expression_statement (+23 nodes collapsed)

comment "# Particle couples to its 8 neighboring lattice sites"

comment "# when a particle is at a lattice site in any coordinate,"

comment "# the right hand side neighbor is included"

comment "# but the coupling weight for that neighbor is 0"

comment "# find the lower left lb node to which the particle couples"

expression_statement (+26 nodes collapsed)

expression_statement (+36 nodes collapsed)

expression_statement

assignment

identifier "indices_unshifted"

= "="

list_comprehension

[ "["

binary_operator

identifier "lower_idx_unshifted"

+ "+"

identifier "ijk"

for_in_clause

for "for"

identifier "ijk"

in "in"

identifier "ijks"

] "]"

comment "# Nodes with an index within the primary box in shear_plane_"...

comment "# do not need Lees-Edwards handling"

expression_statement (+34 nodes collapsed)

expression_statement

assignment

identifier "unshifted_nodes"

= "="

list_comprehension

[ "["

call

identifier "lb_node"

argument_list

( "("

identifier "idx"

) ")"

for_in_clause

for "for"

identifier "idx"

in "in"

identifier "dont_need_shift"

] "]"

expression_statement (+25 nodes collapsed)

comment "# Handle indices which are not in the primary box in the she"...

comment "# normal"

expression_statement (+45 nodes collapsed)

expression_statement (+38 nodes collapsed)

comment "# replace the index in shear direction"

expression_statement

assignment

identifier "shifted_left"

= "="

call

attribute

identifier "copy"

. "."

identifier "deepcopy"

argument_list

( "("

identifier "to_be_shifted_left"

) ")"

for_statement (+31 nodes collapsed)

expression_statement

assignment

identifier "shifted_right"

= "="

call

attribute

identifier "copy"

. "."

identifier "deepcopy"

argument_list

( "("

identifier "to_be_shifted_right"

) ")"

for_statement (+31 nodes collapsed)

expression_statement (+28 nodes collapsed)

expression_statement (+27 nodes collapsed)

expression_statement

assignment

identifier "shifted_weights"

= "="

binary_operator

identifier "weights_shifted_left"

+ "+"

identifier "weights_shifted_right"

expression_statement (+23 nodes collapsed)

assert_statement

assert "assert"

comparison_operator

call

identifier "len"

argument_list

( "("

binary_operator

identifier "shifted_nodes"

+ "+"

identifier "unshifted_nodes"

) ")"

== "=="

integer "8"

assert_statement

assert "assert"

comparison_operator

call

identifier "len"

argument_list

( "("

call

identifier "set"

argument_list

( "("

binary_operator

identifier "shifted_nodes"

+ "+"

identifier "unshifted_nodes"

) ")"

== "=="

integer "8"

comment "# no duplicates"

return_statement

return "return"

expression_list

identifier "unshifted_nodes"

, ","

identifier "shifted_nodes"

, ","

identifier "unshifted_weights"

, ","

identifier "shifted_weights"

decorated_definition (+2619 nodes collapsed)

if_statement

if "if"

comparison_operator

identifier "__name__"

== "=="

string

string_start "'"

string_content "__main__"

string_end "'"

: ":"

block

expression_statement

call

attribute

identifier "ut"

. "."

identifier "main"

argument_list

( "("

) ")"

After

module

comment "#"

comment "# This file is part of ESPResSo."

comment "#"

comment "# ESPResSo is free software: you can redistribute it and/or "...

comment "# it under the terms of the GNU General Public License as pu"...

comment "# the Free Software Foundation, either version 3 of the Lice"...

comment "# (at your option) any later version."

comment "#"

comment "# ESPResSo is distributed in the hope that it will be useful"...

comment "# but WITHOUT ANY WARRANTY; without even the implied warrant"...

comment "# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See "...

comment "# GNU General Public License for more details."

comment "#"

comment "# You should have received a copy of the GNU General Public "...

comment "# along with this program. If not, see <http://www.gnu.org/"...

comment "#"

import_statement

import "import"

aliased_import

dotted_name

identifier "unittest"

as "as"

identifier "ut"

import_statement

import "import"

aliased_import

dotted_name

identifier "espressomd"

. "."

identifier "lees_edwards"

as "as"

identifier "lees_edwards"

import_statement

import "import"

dotted_name

identifier "espressomd"

import_statement

import "import"

dotted_name

identifier "espressomd"

. "."

identifier "lb"

import_statement

import "import"

aliased_import

dotted_name

identifier "numpy"

as "as"

identifier "np"

import_statement

import "import"

dotted_name

identifier "itertools"

import_statement

import "import"

dotted_name

identifier "copy"

import_statement

import "import"

aliased_import

dotted_name

identifier "unittest_decorators"

as "as"

identifier "utx"

import_from_statement

from "from"

dotted_name

identifier "tests_common"

import "import"

dotted_name

identifier "fold_index"

expression_statement (+23 nodes collapsed)

function_definition (+34 nodes collapsed)

function_definition (+39 nodes collapsed)

function_definition (+94 nodes collapsed)

function_definition (+78 nodes collapsed)

function_definition

def "def"

identifier "le_aware_lb_nodes_around_pos"

parameters

( "("

identifier "folded_pos"

, ","

identifier "lbf"

, ","

identifier "le_pos_offset"

, ","

identifier "shear_direction"

, ","

identifier "shear_plane_normal"

) ")"

: ":"

block

expression_statement

string

string_start "\"\"\""

string_content "Returns LB node(s) relevant for interpolation around the giv"...

string_end "\"\"\""

comment "# helper to get lb node from index with folding"

function_definition (+26 nodes collapsed)

comment "# center of first lb lattice point is at 0.5 in each Cartesi"...

comment "# determine position in lb units for 3 cases;"

comment "# unshifted, lees-edwards shifted to the left and to the rig"...

expression_statement

assignment

identifier "pos_unshifted_lb_units"

= "="

binary_operator

identifier "folded_pos"

/ "/"

attribute

identifier "lbf"

. "."

identifier "agrid"

- "-"

float "0.5"

comment "# relative to node centers"

expression_statement

assignment

identifier "shear_vec"

= "="

call

identifier "unit_vec"

argument_list

( "("

identifier "shear_direction"

) ")"

expression_statement (+23 nodes collapsed)

comment "# Particle couples to its 8 neighboring lattice sites"

comment "# when a particle is at a lattice site in any coordinate,"

comment "# the right hand side neighbor is included"

comment "# but the coupling weight for that neighbor is 0"

comment "# find the lower left lb node to which the particle couples"

expression_statement (+26 nodes collapsed)

expression_statement (+36 nodes collapsed)

expression_statement

assignment

identifier "indices_unshifted"

= "="

list_comprehension

[ "["

binary_operator

identifier "lower_idx_unshifted"

+ "+"

identifier "ijk"

for_in_clause

for "for"

identifier "ijk"

in "in"

identifier "ijks"

] "]"

comment "# Nodes with an index within the primary box in shear_plane_"...

comment "# do not need Lees-Edwards handling"

expression_statement (+34 nodes collapsed)

expression_statement

assignment

identifier "unshifted_nodes"

= "="

list_comprehension

[ "["

call

identifier "lb_node"

argument_list

( "("

identifier "idx"

) ")"

for_in_clause

for "for"

identifier "idx"

in "in"

identifier "dont_need_shift"

] "]"

expression_statement (+25 nodes collapsed)

comment "# Handle indices which are not in the primary box in the she"...

comment "# normal"

expression_statement (+45 nodes collapsed)

expression_statement (+38 nodes collapsed)

comment "# replace the index in shear direction"

expression_statement

assignment

identifier "shifted_left"

= "="

call

attribute

identifier "copy"

. "."

identifier "deepcopy"

argument_list

( "("

identifier "to_be_shifted_left"

) ")"

for_statement (+31 nodes collapsed)

expression_statement

assignment

identifier "shifted_right"

= "="

call

attribute

identifier "copy"

. "."

identifier "deepcopy"

argument_list

( "("

identifier "to_be_shifted_right"

) ")"

for_statement (+31 nodes collapsed)

expression_statement (+28 nodes collapsed)

expression_statement (+27 nodes collapsed)

expression_statement

assignment

identifier "shifted_weights"

= "="

binary_operator

identifier "weights_shifted_left"

+ "+"

identifier "weights_shifted_right"

expression_statement (+23 nodes collapsed)

assert_statement

assert "assert"

comparison_operator

call

identifier "len"

argument_list

( "("

binary_operator

identifier "shifted_nodes"

+ "+"

identifier "unshifted_nodes"

) ")"

== "=="

integer "8"

assert_statement

assert "assert"

comparison_operator

call

identifier "len"

argument_list

( "("

call

identifier "set"

argument_list

( "("

binary_operator

identifier "shifted_nodes"

+ "+"

identifier "unshifted_nodes"

) ")"

== "=="

integer "8"

comment "# no duplicates"

return_statement

return "return"

expression_list

identifier "unshifted_nodes"

, ","

identifier "shifted_nodes"

, ","

identifier "unshifted_weights"

, ","

identifier "shifted_weights"

decorated_definition (+2619 nodes collapsed)

if_statement

if "if"

comparison_operator

identifier "__name__"

== "=="

string

string_start "'"

string_content "__main__"

string_end "'"

: ":"

block

expression_statement

call

attribute

identifier "ut"

. "."

identifier "main"

argument_list

( "("

) ")"